Here is an excerpt from an interview with Warrel Dane about the story of DNB....
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MU: I've seen the record described as-loosely based on a theme.Is that the case or is there really some more cohesion going on?
WD: Well, there is-the story is purposefully vague because I want people to get different things out of it, perhaps. And I don't want it to be very obvious on the surface, because there's more going on in the story than I'm really letting on when I'm doing interviews.
MU: There goes about 12 of my questions!
WD: (laughs) So, you know, I like making it interesting.
MU: Did you set out to write a concept album?
WD: No. It just so happened that right about the time we were beginning writing for this- I have a friend - an old, old girlfriend - who disappeared, years and years and years ago. Well, not years and years ago, about ten years. Anyway, I had been having these strange dreams about her, just out of nowhere, right when we were starting to write the record. That' s where the title track came from by the way, "Dreaming Neon Black" - I was dreaming that she had been drowned. And this whole thing seemed like - well, I'm having these weird dreams, maybe I have to write a record about her!
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NP: Dream Theater - Images & Words