Not sure about protools, but I have to do something similar in Nuendo as part of my work flow for editing drums. The same process might work for you.
If it's possable, make a macro that is [locate next event (or beat detective hitpoint) > set marker] and hold it down until you're through your track.
Create a new midi track with a drum map and create a note anywhere and "cut" it so its in memory. Locate the first marker and paste the midi note. Create a macro that is [locate next marker > paste] and again, hold that bitch down for a while.
Like I said I know nothing about pro tools so this is probably useless, but you never know.