Ok here are my recordings of a single guitar with the settings you're using. There is a difference though. Since I record at home I'm using Lead Level at 9:30 and Master at 9:00.
Two separate clips with different pickups and tuning:
Seymour Duncan JB Tuned Drop D -
http://www.oep.se/ljud/JB.mp3
EMG 81 Drop Bb -
http://www.oep.se/ljud/EMG.mp3
I don't have the freshest tubes in my amp(probably like 6 years old).
My settings that I normally use are like this for rhythm guitars:
Crunch Gain - MAX
Lead Gain - 12 to 2 o clock
Bass - 12 o clock
Middle - 12 o clock
Treble - 12 o clock
Lead gain 12 o clock
Presence - 9 o clock
Depth Off
Countor On
Smooth Off
When playing live I usually just turn the treble knob depending on what cab I'm using.