I dont see the filler material on Come Clarity that everyone is referring to. For me its their best post-Clayman album, and I rarely listen to just a single song from it, its usually from start to finish. The only bad thing I can say about it is the Scream, the lyrics to be precise.
Hmm, looking at it you're actually right. The only filler song is Pacing Death's Trail, which is a real nothing of a song. Come Clarity & Scream are bleurgh. All the other songs range from good to great.