-Same album, on Thus Spake the Nightspirit 1:20-3:00 is my favourite passage ever.
Haha weird, I was going to say this song but was going to mention a different bit. Are you sure you got those times correct? I was going to say from 3:00 onwards, when it slows down and you hear him sing "Thus Spake the Nightspirit". NIGHTSPIRIT...SPIRIT...SPIRIT, EMBRACE MY SOUL.
Some others:
Opeth - Black Rose Immortal 11:55-14:45. STUNNING! Especially the bit around where he sings "Granted you a hollow stare. Another soul within the divine herd".
Empyrium - Mourners 6:00-7:55. Favourite moment in music ever, favourite song ever. The solo is just amazing, but I love the build up to it too.
Windir - Fagning 4:15-7:30 (especially from 5:25). A bit different this one. Quite a long passage but the whole thing is just perfect.
Agalloch - Bloodbirds. Last couple of minutes.
I have loads others but that's a few that came to mind instantly. Good thread!