LOL, dude, while you may have gotten alot of the insinuation and metaphor and inference, u do not get all of it. neither do I, but I used to work for the agent to the Wachowski's, and ive been talking with him about the trilogy as a whole. Though I couldn't fully understand it, some of the shit he was throwin at me was insanely deep and def broadened all of the characters relationships and evolutions beyond anything I could comprehend. He's gonna give me a reading list and maybe in the future, when im wiser and know more about life, i'll be able to appriciate these movies on all of the levels that the writer's laid out there. If only I was more well read.
btw, purely as movies and not pieces of art meant to be analyzed to death, there were flaws in dialogue and acting, no question.