Okay, this is pretty much all I know...
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Guitar:
1. according to the "learn how to play The Drapery Falls" the lead in the intro was Steven's idea
2. the solo in Bleak right before "help me cure you" part
3. it says in the Deliverance booklet that Wilson did backing guitars, but I have no idea what exactly
Lyrics
Death Whispered a Lullaby
Piano/Keyboards/Meletron:
The Leper Affinity
Patterns in the Ivy
A Fair Judgement
By the Pain I See in Others
Windowpane
In My Time of Need
Closure
Hope Leaves
To Rid the Disease
Ending Credits
Weakness
Vocals:
Bleak - (Devious movements in your eyes/breath comes out white clouds with your lies/mist ripples 'round your thin white neck/cold fingers mark this dying wreck)
Harvest - high vocals in second chorus
The Drapery Falls - high vocals in "waking up to your sound again"
Master's Apprentices - higher vocals in "ahhhhhh ahhh" part
Windowpane - higher vocals during "there is deep prejudice in me..."
Weakness - higher vocals "stain me, save me, take me to my home.."
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Obviously Steven had a lot to do with Mike's clean vocal production. You can pretty much assume that he had influence on anything done to the clean vocals that was not heard on albums before Blackwater Park. Even if it was Mike's idea, it was Steven who was behind the effects.
If you watch the Lamentations DVD it shows Steven working with the band during guitar parts, so you can see more of what he inspired there.
Live, Per adds vocals where it was Mike doubled, but I think I covered every part that was not just Mike with layered vocals.
Knowing me, I'm probably missing something big and I will have to edit this a million times. Or someone can just say what I missed.