Yeah I hear ya dude. The only time it is ever an issue is on really fast 16th note double bass rolls where you are really butchering the overheads with splits everywhere. That's when I start editing stuff separately, but you will be surprised what you can get away with when editing everything together. Like I said, rule of thumb, edit everything together always. If you listen back and something sounds like shit, then edit the kick on it's own and leave everything else natural.
^ Words of wisdom. I will continue through the rest of the songs by editing together and if I need to I'll go back and re-edit all the songs where I edited the kick totally separately. Thanks again Adam!